PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J636000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 423aa    MW: 44762.6 Da    PI: 6.0673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J636000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12228272554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Pavir.J636000.1.p 228 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 272
                        8899********************95.....599************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16225293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16227290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10228272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-5238272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGCERGEIEV GLSDTEAAAV AGHVQQSLME ELMQLAPAAV PSSSPSSLPS LSIGSPEYSS  60
LLIRSMAAAA EPSSSQEWQP LLHPAAVQLP GLLPPAYGPP QFLGSEAEDA AIAEAMLAVI  120
SSSAPLPPPA AFTDAPPWLV LHRAQRWSPR RRAGAFRAYS AALSPRARPR PGAPGQRMAK  180
TAIALMLSVH VAMRDRELAA ARQQEDAAAA QPPPAPPPPQ HTSSQLHHMI SERRRRERLN  240
ESFQTLRALL PPGSKKDKAT VLANTTEYMH KLIADVSDLE KRNRQLEAQL GLPLETQQAW  300
SGDDSSERVQ VDVTAGASTS AAGGQAQVVS IRVTVRAECD LSEVVIAMLA GIKETGRFAV  360
VTVDARQRSN GHAQVGITLR VEPGGGDDEP DETTLKEAVA KAVEDAVARP PSPSPPPPQW  420
SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967227.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK3Y1B70.0K3Y1B7_SETIT; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-18bHLH family protein